Dr. Halsey's personal journal

Dr. Halsey's personal journal was a journal detailing the thoughts and discoveries of Doctor Catherine Halsey over a period of 42 years, between August 2510 and August 2552.

Halsey
Halsey bought the journal at a Reach shop on August 2510. She kept it with her for the next four decades to document her research to counter the Insurrectionists, and later, the Covenant threat. She also expressed her thoughts on her personal relationships with Jacob Keyes and their daughter, her Spartans, and the apocalyptic Human-Covenant War. Halsey eventually left the journal behind at the Babd Catha Forerunner complex, where it was retrieved by Office of Naval Intelligence personnel just before the site, along with SWORD Base, was destroyed.

ONI
Following its recovery from SWORD Base into the hands of ONI, the journal together with an interactive disk chronicling Noble Teams final operations had the reference number UNSC X16-69859-02. In 2553, various ONI personnel and psychologists read and analyzed the journal. Based on information from the journal, AI Black-Box suggested that Halsey was trying to cleanse her conscience by hiding her Spartans on Onyx. BB also noted based on the journal that Halsey has a sense of ownership over people, yet was confused that Halsey gave her daughter to Jacob Keyes.

Captain Serin Osman after reading the journal came to despise Halsey for her extremely unethical work on the SPARTAN-II program. This led to Naomi-010 also reading the journal, and having mixed feeling on it. When finally meeting Halsey on Ivanoff Station in March 2553, ONI director Admiral Margaret Parangosky remarks that she was impressed by Halsey's abilities as an artist, referring to the plentiful sketches she had drawn throughout her journal. Following this the journal was sealed up and finally fully documented on the 1st of June 2553.

Other
By June 1, 2553, the journal was handled by W. B. Eton, who later gave the journal to someone who was involved in Operation: WHITE GLOVE. By 2610, the individual had passed away and the journal was given to a subordinate operative. The operative later sent the journal to his cousin on Earth. The operative told his cousin to either deliver it to the curator of the Museum of Humanity, Ms. Bjarne, or give it to the old guard at IN.

Content
In the journal, several important revelations are made regarding Cortana and Halsey's relationship with Captain Jacob Keyes and Miranda Keyes. Halsey states in an indirect fashion that she and Captain Keyes had a relationship and that though Halsey had been close to Miranda, they had drifted apart. It is strongly implied that Halsey is the mother of Miranda Keyes.

In November 2524 Halsey wrote that she was reunited with "her lieutenant" while attending a conference at the University of Calippus, from which it is inferred that the two became intimate. Four months later she wrote a small side note stating "she will have to answer for making me drink decaf ," suggesting Halsey was pregnant. In September, 2525, ten months after her reunion with Keyes, she wrote about experiencing separation anxiety, noting "I guess not hearing her cry wakes me up at night too." Then, on July 12, 2531 on the side of the page, Dr. Halsey wrote, "Jacob has agreed to take her in. I'll miss her, but it's for the best."

Furthermore, it is stated that when Miranda received command of her first ship,, she had invited Halsey to attend the ceremony but Halsey refused, stating, "I didn't go. Because her father would be there? Because I am neck deep in the final stages of a half-dozen projects? I know why I didn't go. I don't want to say it." Another hint toward Miranda's parentage is that Halsey wrote in the journal that Miranda had her surname changed to "Keyes", which she believed was done to try and impress her father. It is also mentioned by Halsey that Cortana's appearance somewhat resembled Miranda. Since Cortana was derived from Dr. Halsey's own brain, this remark would not have much sense or relevance had Miranda not been biologically related to her.

The journal also provides an explanation of why Cortana was seen on Reach as well as mentioned in Halo: The Fall of Reach, assisting John-117 and his team of SPARTANs on their mission. It seems Halsey needed to analyze the Forerunner symbols and systems in Professor Sorvad's site. Halsey and Cortana both independently figured out the "Solomonic solution" which helped "divide" Cortana and allow "parts of her" to help Halsey while updating her "incarnate" self on the until the last minute. The two parts were reunited sometime after Cortana's fragment was delivered by SPARTAN-B312 to Captain Keyes before the Pillar of Autumn left Reach.

It provides an explanation for the inconsistent numbers of Spartans, particularly involving those not present during the Operation: RED FLAG briefing. Halsey states, "That lie about all the Spartans gathered here, save for Gray - will that come back to haunt me?" Halsey notes that the bodies of the candidates who were killed during the augmentation procedures were placed in cryo-stasis, with the possibility that they may some day be resuscitated, though they appeared to be buried in space. She also notes that at least some of the candidates who were crippled could some day be rehabilitated and sent to active duty.

The journal also confirms that Dr. Halsey was aware of the existence of SPARTANs who were "not [hers]" well before the events of Halo: First Strike. She and Kalmiya had uncovered numerous ONI documents and encrypted files that suggested the existence of another SPARTAN program after the was deployed outside the Epsilon Eridani system for a week, carrying various "carcinogenic", "mutanogenic", and "experimental" drugs. Upon his return, Admiral Ysionris Jeromi informed her that he knew little of what was going on, and could tell her nothing. Finally, Halsey reveals that her suspicions of other SPARTANS were confirmed when she met Noble Team at Sword Base. Later, at CASTLE Base, she discovered that they, with the exception of Jorge-052, had been SPARTAN-IIIs.

Accompanying items
When the journal was recovered from SWORD Base by Beta 5 personnel in 2552 prior to its destruction as part of Operation: WHITE GLOVE, the journal had the following documents and items in it:
 * Three Intersystem News kiosk tear sheets; "HAVEN TERROR BOMBING KILLS TWO MILLION", "BLISS DECIMATED", and "LCDR MIRANDA KEYES AWARDED SILVER STAR"
 * DNA sequencing chart of ORION Candidate 047
 * BIOnano card of SPARTAN-117
 * Single-image photo of a space anomaly, recorded by a Mars telescope in 2524, accompanied by a note
 * A memo from the log of detailing the glassing of the colony of Bliss
 * An ONI memo regarding Covenant glyphs, accompanied by a photo of the symbols on a Sangheili's armor
 * Heavily redacted deployment info note of SPARTAN-052, sent to Dr. Halsey by Colonel Urban Holland
 * A print of a screencapture from a security video of NOBLE Team's operations
 * Schematic of the Mark IV MJOLNIR PAA
 * Hand-drawn diagram of the "Keyes Loop"
 * CAA map of Reach, annotated with Halsey's notes on artifact sites and ONI facilities
 * Dr. Halsey's ONI security badge
 * SPARTAN-II unit patch
 * Partial SPARTAN-II candidate records of SPARTAN-051 (accompanied by a psychological evaluation), SPARTAN-095 and SPARTAN-137.

Excised pages
There are two pages (four sides) that were torn out from the journal entry dated 04.08.2547. Dubbed '''REF. UNDD 5213.9-R''' to ONI, the pages document Dr. Halsey's private experiment to create a fractal AI housing within slipspace. Halsey supposedly tore these two pages out after the experiment, presumably to ensure secrecy.

Trivia

 * Vice Admiral Michael Stanforth is referenced throughout the journal as "the Vice Admiral", but he is never mentioned by name.
 * The journal contains 200 pages and is 7.25 in tall, 5.25 in wide and approx. 1 in thick.

Behind the scenes

 * The booklet is included with the Limited and Legendary editions of Halo: Reach. The journal was co-written by Eric Nylund in conjunction with Bungie and 343 Industries, with Lorraine McLees serving as art director and Mike Vaillancourt as illustrator.
 * A small number of copies of the journal — no more than five according to Eric Nylund — did not have the two missing pages ripped out. This was so the Halo fan community could discover the pages on their own. Nylund expected the fans to find the pages within "a few weeks"; however, the pages failed to surface until May 6, 2016, when Jeff Easterling posted them in the Canon Fodder article "Noble Intentions". Both pages can be read here.
 * In Halo: Reach, Halsey's journal can be found as an in-game object on level "The Package" in the Tribute Room. It is seen again in Halsey's office (likely the one in CASTLE Base) during the first cutscene of Halo 5: Guardians on the mission Osiris.

List of appearances

 * Halo: Reach
 * Halo: Glasslands
 * Halo: Mortal Dictata
 * Halo 5: Guardians